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Issue Genet. Sel. Evol.
Volume 39, Number 6, November-December 2007
Page(s) 651 - 668
DOI 10.1051/gse:2007030
Published online 06 December 2007

References of  Genet. Sel. Evol. 39 (2007) 651-668
  1. Ashburner M., Ball C.A., Blake J.A., Botstein D., Butler H., Cherry J.M., Davis A.P., Dolinski K., Dwight S.S., Eppig J.T., Harris M.A., Hill D.P., Issel-Tarver L., Kasarskis A., Lewis S., Matese J.C., Richardson J.E., Ringwald M., Rubin G.M., Sherlock G., Gene ontology: tool for the unification of biology, The Gene Ontology Consortium, Nat. Genet. 25 (2000) 25-29 [CrossRef] [PubMed].
  2. Bannerman D.D., Paape M.J., Lee J.W., Zhao X., Hope J.C., Rainard P., Escherichia coli and Staphylococcus aureus elicit differential innate immune responses following intramammary infection, Clin. Diagn. Lab Immunol. 11 (2004) 463-472 [CrossRef] [PubMed].
  3. Breiman L., Random forests, Mach Learn 45 (2001) 5-32 [CrossRef].
  4. Breiman L., Friedman J., Stone C.J., Olshen R.A., Classification and regression trees, Chapman & Hall, New York, 1984.
  5. de Koning D.J., Jaffrézic F., Lund M.S., Watson M., Channing C., Hulsegge I., Pool H.M., Buitenhuis B., Hedegaard J., Hornshøj H., Jiang L., Sørensen P., Marot G., Delmas C., Lê Cao K.-A., San Cristobal M., Baron M.D., Malinverni R., Stella A., Brunner R.M., Seyfert H.-M., Jensen K., Mouzaki D., Waddington D., Jiménez-Marín Á., Pérez-Alegre M., Pérez-Reinado E., Closset R., Detilleux J.C., Dovc P., Lavric M., Nie H., Janss L., The EADGENE Microarray Data Analysis Workshop, Genet. Sel. Evol. 39 (2007) 621-631.
  6. Déjean S., Martin P., Baccini A., Besse P., Clustering time series gene expression data using smoothing spline derivatives EURASIP, J. Bioinform. Syst. Biol., vol. 2007, article ID 70561, 10 pages.
  7. Draghici S., Khatri P., Martins R.P., Ostermeier G.C., Krawetz S.A., Global functional profiling of gene expression, Genomics 81 (2003) 98-104 [CrossRef] [PubMed].
  8. Durinck S., Moreau Y., Kasprzyk A., Davis S., De M.B., Brazma A., Huber W., BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis, Bioinformatics 21 (2005) 3439-3440 [CrossRef] [PubMed].
  9. Eisen M.B., Spellman P.T., Brown P.O., Botstein D., Cluster analysis and display of genome-wide expression patterns, Proc. Natl. Acad. Sci. USA 95 (1998) 14863-14868 [CrossRef] [PubMed].
  10. Falcon S., Gentleman R., Using GOstats to test gene lists for GO term association, Bioinformatics 23 (2007) 257-258 [CrossRef] [PubMed].
  11. Gadat S., Younes L., A stochastic algorithm for feature selection in pattern recognition, J. Mach. Learn. 8 (2007) http://jmlr.csail.mit.edu/papers/v8/.
  12. Gentleman R.C., Carey V.J., Bates D.M., Bolstad B., Dettling M., Dudoit S., Ellis B., Gautier L., Ge Y., Gentry J., Hornik K., Hothorn T., Huber W., Iacus S., Irizarry R., Leisch F., Li C., Maechler M., Rossini A.J., Sawitzki G., Smith C., Smyth G., Tierney L., Yang J.Y., Zhang J., Bioconductor: open software development for computational biology and bioinformatics, Genome Biol. 5 (2004) R80 [CrossRef] [PubMed].
  13. Goeman J.J., Buhlmann P., Analyzing gene expression data in terms of gene sets: methodological issues, Bioinformatics 23 (2007) 980-987 [CrossRef] [PubMed].
  14. Goeman J.J., Oosting J., Cleton-Jansen A.M., Anninga J.K., van Houwelingen H.C., Testing association of a pathway with survival using gene expression data, Bioinformatics 21 (2005) 1950-1957 [CrossRef] [PubMed].
  15. Jaffrézic F., de Koning D.J., Boettcher P.J., Bonnet A., Buitenhuis B., Closset R., Déjean S., Delmas C., Detilleux J.C., Dovc P., Duval M., Foulley J.-L., Hedegaard J., Hornshoj H., Hulsegge I., Janss L., Jensen K., Jiang L., Lavric M., Lê Cao K.-A., Lund M.S., Malinverni R., Marot G., Nie H., Petzl W., Pool H.M., Robert-Granié C., San Cristobal M., van Schotshorst E.M., Schuberth H.-J., Sørensen P., Stella A., Tosser-Klopp G., Waddington D., Watson M., Yang W., Zerbe H., Seyfert H.-M., Analysis of the real EADGENE data set: Comparison of methods and guidelines for data normalisation and selection of differentially expressed genes, Genet. Sel. Evol. 39 (2007) 633-650.
  16. Lê Cao K.A., Bonnet A., Besse P., Robert-Granié C., San Cristobal M., Feature selection with random forests for unbalanced multiclass microarray data: application in pig ovarian follicular development, Belo Horizonte, Brazil, 13 August 2006, Proceedings of the 8th World Congress on Genetics Applied to Livestock Production.
  17. Robert-Granié C., Baccini A., Besse P., Déjean S., Ferré P.J., Liaubet L., Martin P.G.P., San Cristobal M., Kinetics analysis of microarray data using semiparametric mixed models, Belo Horizonte, Brazil, 13 August 2006, Proceedings of the 8th World Congress on Genetics Applied to Livestock Production.
  18. Vangroenweghe F., Rainard P., Paape M., Duchateau L., Burvenich C., Increase of Escherichia coli inoculum doses induces faster innate immune response in primiparous cows, J. Dairy Sci. 87 (2004) 4132-4144 [PubMed].
  19. Watson M., CoXpress: differential co-expression in gene expression data, BMC Bioinformatics 7 (2006) 509 [CrossRef] [PubMed].
  20. Zhang J., Carey V., Gentleman R., An extensible application for assembling annotation for genomic data, Bioinformatics 19 (2003) 155-156 [CrossRef] [PubMed].



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