Free Access
Genet. Sel. Evol.
Volume 38, Number 5, September-October 2006
Page(s) 535 - 550
Published online 06 September 2006
References of  Genet. Sel. Evol. 38 (2006) 535-550
  1. Almeida L.M., Carareto C.M., Multiple events of horizontal transfer of the Minos transposable element between Drosophila species, Mol. Phylogenet. Evol. 35 (2005) 583-594 [PubMed].
  2. Biémont C., Cizeron G., Distribution of transposable elements in Drosophila species, Genetica 105 (1999) 43-62 [CrossRef] [PubMed].
  3. Boeke J.D., Garfinkel D.J., Styles C.A., Fink G.R., Ty elements transpose through an RNA intermediate, Cell 40 (1985) 491-500 [CrossRef] [PubMed].
  4. Brunet F., Godin F., David J.R., Capy P., The mariner transposable element in the Drosophilidae family, Heredity 73 (1994) 377-385 [PubMed].
  5. Brunet F., Godin F., Bazin C., Capy P., Phylogenetic analysis of Mos1-like transposable elements in the Drosophilidae, J. Mol. Evol. 49 (1999) 760-768 [CrossRef] [PubMed].
  6. Capy P., Bazin C., Higuet D., Langin T., Dynamics and Evolution of transposable elements, 1st edn., Landes Bioscience, Springer, Heidelberg, 1998.
  7. Castro J.P., Carareto C.A., P elements in saltans group of Drosophila: a new evaluation of their distribution and number of genomic insertion sites, Mol. Phylogenet. Evol. (2004) 383-387.
  8. Cavarec L., Heidmam T., The Drosophila copia retrotransposon contains binding sites for transcriptional regulation by homeoproteins, Nucleic Acids Res. 21 (1993) 5041-5049 [PubMed].
  9. Cavarec L., Jensen S., Heidmam T., Identification of a strong transcriptional activator for the copia retrotransposon responsible for its differential expression in Drosophila hydei and melanogaster cell line, Biochem. Bioph. Res. Co. 203 (1994) 392-399 [CrossRef].
  10. Cavarec L., Jensen S., Casella J.F., Cristescu S.A., Heidmam T., Molecular cloning and characterization of a transcription factor for the copia retrotransposon with homology to BTB-containing lola neurogenic factor, Mol. Cell. Biol. 17 (1997) 482-494 [PubMed].
  11. Clark J.B., Kidwell M.G., A phylogenetic perspective on P transposable element evolution in Drosophila, Proc. Natl. Acad. Sci. USA 94 (1997) 11428-11433 [CrossRef] [PubMed].
  12. Clark J.B., Maddison W.P., Kidwell M.G., Phylogenetic analysis supports horizontal transfer of P transposable elements, Mol. Biol. Evol. 11 (1994) 40-50 [PubMed].
  13. Clark J.B., Altheide T.K., Sclosser M.J., Kidwell M.G., Molecular evolution of P transposable elements in genus Drosophila I. The saltans and willistoni species groups, Mol. Biol. Evol. 12 (1995) 902-913 [PubMed].
  14. Csink A.K., McDonald J.F., Analysis of copia sequence variation within and between Drosophila species, Mol. Biol. Evol. 12 (1995) 83-93 [PubMed].
  15. Cuadrado M., Sacristan M., Antequera F., Species-specific organization of CpG island promotors at mammalian homologous genes, EMBO Rep. 2 (2001) 586-592 [CrossRef] [PubMed].
  16. Daniels S.B., Peterson K.R., Straubaugh L.D., Kidwell M.G., Chovnick A., Evidence for horizontal transmission of the P transposable elements between Drosophila species, Genetics 124 (1990) 339-355 [PubMed].
  17. Daniels S.B., Chovnick A., Boussy I., Distribution of hobo transposable elements in the genus Drosophila, Mol. Biol. Evol. 8 (1990) 589-606.
  18. Durando C.M., Baker R.H., Etges W.J., Heed W., Wasserman M., DeSalle R., Phylogenetic analysis of the repleta species group of the genus Drosophila using multiple sources of characters, Mol. Phylogenet. Evol. 16 (2000) 296-307 [PubMed].
  19. Emori Y., Shiba T., Kanaya S., Inouye S., Yuki S., Saigo K., Determination of the nucleotide sequences of copia and copia-related RNA in Drosophila VLP, Nature 315 (1985) 773-776 [CrossRef] [PubMed].
  20. Flavell A.J., Levis R., Simon M.A., Rubin G.M., The 5'termini of RNAs encoded by the transposable element copia, Nucleic Acids Res. 9 (1981) 6279-6291 [PubMed].
  21. Flavell A.J., Dunbar E., Anderson R., Pearce S.R., Hartley R., Kumar A., Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants, Nucleic Acids Res. 20 (1992) 3639-3644 [PubMed].
  22. Grabe N., AliBaba2: context specific identification of transcription factor binding sites, In Silico Biol. 2 (2002) S1-S15 [PubMed].
  23. Hasegawa M., Kishino H., Yano T., Dating of the human-ape splitting by molecular clock of mitochondrial DNA, J. Mol. Evol. 21 (1985) 160-174 [CrossRef].
  24. Heredia F., Loreto E.L.S., Valente V.L.S., Complex evolution of gypsy in Drosophilid species, Mol. Biol. Evol. 21 (2004) 1831-1842 [PubMed].
  25. Jordan I.K., McDonald J.F., Evolution of copia retrotransposon in Drosophila melanogaster species subgroup, Mol. Biol. Evol. 15 (1998) 1160-1171 [PubMed].
  26. Jordan I.K., McDonald J.F., Interelement selection in the regulatory region of the copia retrotransposon, J. Mol. Evol. 47 (1998) 670-676 [CrossRef] [PubMed].
  27. Jordan I.K., Matyunina V.L., McDonald J.F., Evidence for recent horizontal transfer of long terminal repeat retrotransposon, Proc. Natl. Acad. Sci. USA 96 (1999) 12621-12625 [CrossRef] [PubMed].
  28. Lachaise D., Cariou M.-L., David J.R., Lemeunier F., Tsacas L., Ashburner M., Historical biogeography of the Drosophila melanogaster species subgroup, Evol. Biol. 22 (1988) 159-225.
  29. Long F., Hong L., Chang H., Sumazin P., Zhang M., Zilberstein A., Genome-wide prediction and analysis of function-specific transcription factor binding sites, In Silico Biol. 4 (2004) 395-410 [PubMed].
  30. Loreto E.L.S., Valente V.L.S., Zaha A., Silva J.C., Kidwell M.G., Drosophila mediopunctata P elements: A new example of horizontal transfer, J. Hered. (2001) 375-381.
  31. Ludwig M., Bergman C., Patel N., Kreitman M., Evidence for stabilizing selection in a eukaryotic enhancer element, Nature (2000) 564-567.
  32. Martinez-Sebastian M., Hernández M., Mejias B., Gas M., Pérez A., Pascual L., De Frutos R., Evolutionary patters of gypsy and bilbo retrotransposon families in the Drosophila species of the obscura group, Mol. Phylogenet. Evol. 22 (2002) 254-266.
  33. Maruyama K., Hartl D.L., Evidence for interspecific transfer of transposable element mariner between Drosophila and Zaprionus, J. Mol. Evol. 33 (1991) 514-524 [CrossRef] [PubMed].
  34. Matyunina L.V., Jordan I.K., McDonald J.F., Naturally occurring variation in copia expression is due to both element (cis) and host (trans) regulatory variation, Proc. Natl. Acad. Sci. USA 93 (1996) 855-864.
  35. McDonald J.F., Matyunina L.V., Wilson S.W., Jordan I.K., Bowen N.J., Miller W.J., LTR retrotransposon and the evolution of eukaryotic enhancers, Genetica 100 (1997) 3-13 [CrossRef] [PubMed].
  36. Piano F., Parisi M.J., Karess R., Kambysellis M.P., Evidence for redundancy but not trans factor-cis element coevolution in the regulation of Drosophila Yp genes, Genetics 152 (1999) 605-616 [PubMed].
  37. Pinsker W., Haring E., Hangemann S., Miller W.J., The evolutionary life history of P transposons: from horizontal invaders to domesticated neogenes, Chromosoma 110 (2001) 148-158 [PubMed].
  38. Posada D., Cradall K.A., MODELTEST: testing the model of DNA substitution, Bioinformatics 14 (1998) 817-818 [CrossRef] [PubMed].
  39. Robertson H.M., Soto-Adames F.N., Walden K.K., Avancini R.M., Lampe D.J., The mariner transposon of animals: horizontally jumping genes, in: Syvanen M., Kado C.I. (Eds.), Horizontal gene transfer, Academic Press, San Diego, CA, 2002.
  40. Rozas J., Rozas R., DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis, Comput. Appl. Biosci. 13 (1997) 307-311 [PubMed].
  41. Sánchez-Gracia A., Maside X., Charlesworth B., High rate of horizontal transfer of transposable elements in Drosophila, Trends Genet. 21 (2005) 200-203 [CrossRef] [PubMed].
  42. Serfling E., Lubbe A., Dorsch-Hasler K., Schaffner W., Metal-dependent SV40 viruses containing inducible enhancers from the upstream region of metallothionein genes, EMBO J. 4 (1985) 3851-3859 [PubMed].
  43. Silva J.C., Loreto E.L., Clark J.B., Factors that affect the horizontal transfer of transposable elements, Curr. Issues Mol. Biol. 6 (2004) 57-71 [PubMed].
  44. Simmons G.M. Horizontal transfer of hobo transposable element within the Drosophila melanogaster species complex: evidence of DNA sequencing, Mol. Biol. Evol. 9 (1992) 1050-1060.
  45. Sneddon A., Flavell A.J., The transcriptional control of the copia retrotransposon, Nucleic Acids Res. 17 (1989) 4025-4035 [PubMed].
  46. Swofford D., PAUP: Phylogenetic analysis using parsimony (and other methods), Version 4.0.b10. Sinauer, Sunderland, Massachusetts, 2000.
  47. Thompson J.D., Higgins D.G., Gibson T.J., CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res. 22 (1994) 4673-4680 [PubMed].
  48. Tsacas L., L'identité de Zaprionus vittiger Coquillet et révision des espèces tropicales affines, Bull. Soc. Ent. Fr. 85 (1980) 141-153.
  49. Wilson S.W., Matyunina L.V., McDonald J.F., An enhancer region within the copia untranslated leader contains binding sites for Drosophila regulatory proteins, Gene 209 (1998) 239-246 [CrossRef] [PubMed].
  50. Zupunski V., Gubenack F., Kordis D., Evolutionary dynamics and evolutionary history in the RTE clade of non-LTR retrotransposons, Mol. Biol. Evol. (2001) 1849-1863.