Free Access
Issue |
Genet. Sel. Evol.
Volume 34, Number 4, July-August 2002
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Page(s) | 481 - 507 | |
DOI | https://doi.org/10.1051/gse:2002019 |
References
- Balakrishnan V., Sanghvi L.D., Distance between populations on the basis of attribute data, Biometrics 24 (1968) 859-865.
- Barker J.S.F., Hill W.G., Bradley D., Nei M., Fries R., Wayne R.K., Measurement of domestical animal diversity (MoDAD): Original working group report, FAO, Rome, 1998.
- Bowcock A.M., Ruiz-Linares A., Tomfohrde J., Minch E., Kidd J.R., Cavalli-Sforza L.L., High resolution of human evolutionary trees with polymorphic microsatellites, Nature 368 (1994) 455-457.
- Buchanan F.C., Adams L.J., Littlejohn R.P., Maddox J.F., Crawford A.M., Determination of evolutionary relationships among sheep breeds using microsatellites, Genomics 22 (1994) 397-403.
- Cavalli-Sforza L., Edwards A.W.F., Phylogenetic analysis models and estimation procedure, Evolution 21 (1967) 550-570.
- Cavalli-Sforza L.L., Zonta L.A., Nuzzo F., Bernini L., De Jong W.W.W., Meera Khan P., Ray A.K., Went L.N., Siniscalco M., Nijenhuis L.E., Van Loghem E., Modiano G., Studies on African pygmies. I. A pilot investigation of Babinga pygmies in the central Africa republic (with an analysis of genetic distances), Am. J. Hum. Genet. 21 (1969) 252-274.
- Chakravarthy R., Nei M., Bottleneck effects on average heterozygosity and genetic distances with the stepwise mutation model, Evolution 31 (1977) 347-356.
- Chevalet C., Gillois M., Valeurs approchées des coefficients d'identité dans les populations panmictiques, Lecture Notes in Biomathematics, Modèles Mathématiques en Biologie 41 (1978) 128-136.
- Chiampolini R., Moazami-Goudarzi K., Vaiman D., Dillman C., Mazzanti E., Foulley J.-L., Leveziel H., Cianci D., Individual multilocus genotypes using microsatellites polymorphisms to permit the analysis of the genetic variability within and between Itatlian beef cattle breeds, J. Anim. Sci. 73 (1995) 3259-3268.
- Di Rienzo A., Peterson A.C., Garza J.C., Valdes A.M., Slatkin M., Freimer N.B., Mutational processes of simple-sequence repeat loci in human populations, Proc. Natl. Acad. Sci. USA 91 (1994) 3166-3170.
- Eding H., Meuwissen T.H.E., Marker-based estimates of between and within population kinships for the conservation of genetic diversity, J. Anim. Breed. Genet. 118 (2001) 141-159.
- Edwards A.W.F., Distances between populations on the basis of gene frequencies, Biometrics 27 (1971) 873-881.
- Edwards A.W.F., Cavalli-Sforza L.L., Reconstruction of evolutionary trees, in: Phenetic and Phylogenetic classification, Systematics Association, London 6 1964 pp. 67-76.
- Estoup A., Tailliez C., Cornuet J.M., Solignac M., Size homoplasy and mutationnal process of interrupted microsatellites in two bee species, Apis mellifera and Bombus terrestris (Apidae), Mol. Biol. Evol. 12 (1995a) 1074-1084.
- Estoup A., Garnery L., Solignac M., Cornuet J.M., Microsatellite variation in honey bee (Apis mellifera L.) populations: hierarchical genetic structure and test of the infinite allele and stepwise mutation models, Genetics 140 (1995b) 679-695.
- Feldman M.W., Bergman A., Pollock D.D., Goldstein D.B., Microsatellite genetic distances with range constraints: analytic description and problems of estimation, Genetics 145 (1997) 207-216.
- Felsenstein J., PHYLIP (Phylogeny Inference Package) Version 3.5, Departement of genetics, University of Washington, Seattle, 1993.
- Forbes H.S., Hogg J.T., Buchanan F.C., Crawford A.M., Allendorf F.W., Microsatellite evolution in congeneric mammals: domestic and bighorn sheep, Mol. Biol. Evol. 16 (1995) 1106-1113.
- Foulley J.-L., Hill W.G., On the precision of estimation of genetic distance, Genet. Sel. Evol. 31 (1999) 457-464.
- Goldstein D.B., Linares A.R., Feldman M.W., An evaluation of genetic distances for use with microsatellite loci, Genetics 139 (1995a) 463-471.
- Goldstein D.B., Linares A.R., Cavalli-Sforza L.L., Feldman M.W., Genetic absolute dating based on microsatellites and the origin of modern humans, Proc. Natl. Acad. Sci. USA 92 (1995b) 6723-6727.
- Goldstein D.B., Pollock D.D., Launching microsatellites: a review of mutation processes and methods of hylogenetic inference, J. Hered. 88 (1997) 335-342.
- Goodman M.M., Genetic distances: measuring dissimilarity among populations, Yearbook of physical anthropology 17 (1973) 1-38.
- Gottelli D., Sillero-Zubiri C., Applebaum G.D., Roy M.S., Girman D.J., Garcia-Moreno J., Ostrander E.A., Wayne R.K., Molecular genetics of the most endangered canid: the Ethiopian wolf Canis simiensis, Mol. Ecol. 3 (1994) 301-312.
- Gower J.C., Measures of taxonomic distances between populations based on gene frequencies, in: The assessment of population affinities in man, J.S. Weiner and J. Huizing Edition, Oxford University Press, 1972.
- Gregorius H.R., On the concept of genetic distances between populations based on gene frequencies, Proceeding, Joint IUFRO Meeting, S. 02.04.1-3, Stockholm, Session I, 17-26, 1974.
- Jin L., Macaubas C., Hallmayer J., Kimura A., Mignot E., Mutation rate varies among alleles at a microsatellite loci: phylogenetic evidence, Proc. Natl. Acad. Sci. USA 93 (1996) 15285-15288.
- Kimura M., Crow J.F., The number of alleles that can be maintained in a finite population, Genetics 49 (1964) 725-738.
- Kimura M., Ohta T., Stepwise mutation model and distribution of allelic frequencies in a finite population, Proc. Natl. Acad. Sci. USA 75 (1978) 2868-2872.
- Latter B.D.H., The island model of population differentiation: a general solution, Genetics 73 (1972a) 147-157.
- Latter B.D.H., Selection in finite populations with multiple alleles. III. Genetic divergence with centripetal selection and mutation, Genetics 70 (1972b) 475-490.
- Latter B.D.H., The estimation of genetic divergence between populations based on gene frequency data, Amer. J. Hum. Genet. 25 (1973) 247-261.
- Laval G., Iannuccelli N., Legault C., Milan D., Groenen M.A.M., Giuffra E., Andersson L., Nissen P.H., Jorgensen C.B., Beeckman P., Geldermann H., Foulley J.-L., Chevalet C., Ollivier L., Genetic diversity of eleven European pig breeds, Genet. Sel. Evol. 32 (2000) 187-203.
- Laval G., Éléments de choix des marqueurs et des méthodes dans l'analyse de la diversité génétique intra spécifique : cas des races animales domestiques, Institut national agronomique Paris-Grignon Ph.D. thesis, 2001.
- Li W.H., Simple method for constructing phylogenetic trees from distances matrix, Proc. Natl. Acad. Sci. USA 78 (1981) 1085-1089.
- Li W.H., Nei M., Drift variances of heterozygosity and genetic distance in transient states, Genet. Res. Camb. 25 (1975) 229-248.
- MacHugh D.E., Loftus R.T., Cunninghanm P., Bradley D.G., Genetic structure of seven European cattle breeds assessed using 20 microsatellite markers, Anim. Genet. 29 (1998) 333-340.
- Malécot G., La consanguinité dans une population limitée, C. R. Acad. Sci. Paris 222 (1946) 841-843.
- Malécot G., Les mathématiques de l'hérédité, Masson, Paris, 1948.
- Moazami-Goudarzi K., Laloë D., Furet J.P., Grosclaude F., Analysis of genetic relationships between 10 cattle breeds with 17 microsatellites, Anim. Genet. 28 (1997) 338-345.
- Moran P.A.P., Wandering distributions and the electrophoretic profile, Theor. Popul. Biol. 8 (1975) 318-330.
- Morton N.E., Yee S., Harris D.E., Lew R., Bioassay of kindship, Theor. Popul. Biol. 2 (1971) 507-524.
- Nagamine Y., Higuchi M., Genetic distance and classification of domestic animals using genetic markers, J. Anim. Breed. Genet. 118 (2001) 101-109.
- Nauta M.J., Weissing F.J., Constraints on allele size at microsatellite loci: implication for genetic differentiation, Genetics 143 (1996) 1021-1032.
- Nei M., Interspecific gene differences and evolutionary time estimated from electrophoretic data on protein identity, Am. Naturalist 105 (1971) 385-398.
- Nei M., Genetic distance between populations, Am. Naturalist 106 (1972) 283-292.
- Nei M., Analysis of gene diversity in subdivided populations, Proc. Natl. Acad. Sci. USA 70 (1973) 3321-3323.
- Nei M., Molecular population genetics and evolution, North-Holland Publishing Company, Amsterdam, Oxford, 1975.
- Nei M., Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics 89 (1978) 583-590.
- Nei M., Chakravarti A., Drift variance of FST and GST statistic obtained from a finite number of isolated populations, Theor. Popul. Biol. 11 (1977) 307-325.
- Nei M., Tajima F., Tateno Y., Accuracy of estimated phylogenetic trees from molecular data, J. Mol. Evol. 19 (1983) 153-170.
- Ohta T., Kimura M., A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population, Genet. Res. Camb. 22 (1973) 201-204.
- Paszek A.A., Flickinger G.H., Fontanesi L., Beattie C.W., Rohrer G.A., Alexander L., Schook L.B., Evaluating evolutionary divergence with microsatellites, J. Mol. Evol. 46 (1998) 121-126.
- Pérez-Lezaun A., Calafell F., Mateu E., Comas D., Ruiz-Pacheco R., Bertranpetit J., Microsatellite variation and the differentiation of modern humans, Hum. Genet. 99 (1997) 1-7.
- Pollock D.D., Bergman A., Feldman M.W., Goldstein D.B., Microsatellite with range constraints: parameter estimation and improved distances for use in phylogenetic reconstruction, Theor. Popul. Biol. 53 (1998) 256-271.
- Poteaux C., Bonhomme F., Berrebi P., Microsatellite polymorphism and genetic impact of restocking in mediterranean brown trout, Heredity 82 (1999) 645-653.
- Reynolds J., Weir B.S., Cockerham C.C., Estimation of the coancestry coefficient: basis for a short-term genetic distance, Genetics 105 (1983) 767-779.
- Rogers J.S., Measures of genetic similarity and genetic distances, Univ. of Texas Publ., 1972.
- Saitbekova N., Gaillard C., Obexer-Ruff G., Dolf G., Genetic diversity in Swiss goat breeds based on microsatellites analysis, Anim. Genet. 30 (1999) 36-41.
- Santos E.J.M., Epplen J.T., Epplen C., Extensive gene flow in human populations as revealed by protein and microsatellites DNA markers, Hum. Hered. 47 (1997) 165-172.
- Shriver M.D., Jin L., Chakraborty R., Boerwinkle E., VNTR allele frequency distribution under the stepwise mutation model: a computer simulation approach, Genetics 134 (1993) 983-993.
- Shriver M.D., Jin L. , Boerwinkle E., Deka R., Ferrell R.E., A novel measure of genetic for highly polymorphic tandem repeat loci, Mol. Biol. Evol. 12 (1995) 914-920.
- Slatkin M., Inbreeding coefficients and coalescent time, Genet. Res. Camb. 58 (1994) 167-175.
- Slatkin M., A measure of population subdivision based on microsatellite allele frequencies, Genetics 139 (1995) 457-462.
- Tajima F., Infinite-allele model and infinite-site model in population genetics, J. Genet. 75 (1996) 27-31.
- Takezaki N., Nei M., Genetic distances and reconstruction of phylogenetic trees from microsatellite data, Genetics 144 (1996) 389-399.
- Thaon d'Arnoldi C., Foulley J.-L., Ollivier L., An overview of the Weitzman approach to diversity, Genet. Sel. Evol. 30 (1998) 149-161.
- Valdes A.M., Slatkin M., Freimer N.B., Allele frequencies at microsatellite loci: the stepwise mutation model revisited, Genetics 133 (1993) 737-749.
- Vitalis R., Dawson K., Boursot P., Interpretation of variation across marker loci as evidence of selection, Genetics 158 (2001) 1811-1823.
- Wiegand P., Meyer E., Brinkmann B., Microsatellites structures in the context of human evolution, Electrophoresis 21 (2000) 889-895.
- Weitzman M.L., What to preserve? An application of diversity theory to crane conservation, Quart. J. Econ. 108 (1993) 157-183.
- Wright S., The genetical structure of populations, Ann. Eugenics 15 (1951) 323-354.
- Zhivotovsky L.A., Feldman M.W., Grishechkin S.A., Biased mutation and microsatellites variation, Mol. Biol. Evol. 14 (1997) 926-933.
- Zhivotovsky L.A., A new genetic distance with application to constrained variation at microsatellite loci, Mol. Biol. Evol. 16 (1999) 467-471.
Abstract
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